Author

Alexander A. Nesmelov

Kazan Federal UniversityORCID 0000-0003-4686-2303Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Oleg GuseviD· 2 shared Takahiro KikawadaiD· 2 shared Akira FunahashiiD· 1 shared Alexander BagaeviD· 1 shared Alexander V. CherkasoviD· 1 shared Alexandr Zaitsev· 1 shared Anatoly S. BobeiD· 1 shared Andrey KravetsiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMolecular Biology

Oleg GusevORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 17, 2026

✦ In-depth digest

Benchmarking of bulk transcriptomic harmonization tools in a multi-platform B-cell lymphoma cohort identifies feature-specific quantile normalization and surrogate variable analysis as top-performing methods

Daniil M. Nikitin, Nikolay Borisov, Maria Savchenko…·Arsen Arakelyan

Across 7,174 multi-platform lymphoma transcriptomes, only surrogate variable analysis and feature-specific quantile normalization corrected batch effects while keeping subtype and normal B-cell differences; top-scoring MNN erased biomarker correlations.

1 citation

humanbulk RNA-seq

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Molecular BiologybioRxivPreprintOct 30, 2019

Intracellular localization and gene expression analysis provide new insights on LEA proteins diversity in anhydrobiotic midge

Sabina A. Kondratyeva, Alexander A. Nesmelov, Alexander V. Cherkasov…·Elena Ilyasovna Shagimardanova

The paper analyzes LEA protein expression and localization in anhydrobiotic midge cells to understand their role in desiccation tolerance.

2 citations

proteomicsbulk RNA-seq

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GenomicsScientific ReportsPeer-reviewedDec 12, 2018

Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery

Takahiro Yamada, Yoshitaka Suetsugu, Ruslan M. Deviatiiarov…·Akira Funahashi

This study uses CAGE-seq to analyze transcriptome changes in Pv11 cells during desiccation and rehydration, identifying DEGs and suggesting DNA repair as a recovery mechanism.

19 citations

bulk RNA-seqstatistical model

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