Adam H. Freedman

This paper shows that adrenergic signaling coordinates systemic and local stem cell activation after amputation in axolotls, enhancing regeneration.

The paper evaluates genome annotation methods across 21 species, finding Stringtie and TOGA as top performers, with RNA-seq data improving annotation quality.

This study identifies genes under selection in chimpanzee subspecies at a contact zone, linking environmental variation to genetic divergence and adaptation.

The paper compares short paired-end and long single-end RNA-seq reads, finding that short paired-end reads provide more accurate expression and differential expression results despite fewer total bases.

This study shows that de novo transcriptome assemblies have systematic biases and errors, leading to underestimation of diversity and inaccurate expression estimates, and introduces a method to reduce these issues.