Michal J. Okoniewski

This study shows integrin-identity shapes fibroblast transcriptomes under mechanical confinement, with distinct gene clusters and states depending on integrin class and confinement duration.

V-pipe 3.0 is a computational pipeline for analyzing viral genomic data, enabling reproducible and scalable estimation of within-sample genetic diversity.

The paper maps transcriptional dynamics in murine cortical development, identifying lineage shifts and gene regulatory networks in neural stem cells, basal progenitors, and newborn neurons.