Author

Congting Ye

Xiamen UniversityORCID 0000-0003-4803-2098Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1

Frequent Co-Authors

Andy Peng XiangiD· 1 shared Chengguo YaoiD· 1 shared Dingtian Yu· 1 shared Hongmei Qiao· 1 shared Meiping Fu· 1 shared Pengfei JiniD· 1 shared Qingshun Quinn LiiD· 1 shared Qiumin FengiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperMolecular Biology

Andy Peng XiangORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintFeb 24, 2023

U1 AMO (antisense morpholino oligos) disrupts U1 snRNP structure to promote intronic PCPA (premature cleavage and polyadenylation)

Qiumin Feng, Zejin Lin, Yanhui Deng…·Chengguo Yao

The paper shows that U1 AMO disrupts U1 snRNP structure, leading to intronic premature cleavage and polyadenylation by affecting RNAPII interaction and transcription elongation.

DOI 10.1101/2023.02.24.529985

statistical model

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BioinformaticsGenomics Proteomics & BioinformaticsPeer-reviewedSep 24, 2022

A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq

Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu

This paper surveys computational methods for predicting polyadenylation sites from DNA sequences, bulk RNA-seq, and single-cell RNA-seq data, discussing challenges and future directions.

30 citations

humanbulk RNA-seq

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GenomicsbioRxivPreprintOct 19, 2020

The genomic and transcriptomic foundations of viviparous seed development in mangroves

Hongmei Qiao, Xiaoxuan Zhou, Wenyue Su…·Yingjia Shen

This study identifies genetic and transcriptomic changes associated with vivipary in mangroves, highlighting the loss of the DOG1 gene and altered hormone pathways.

18 citations

plant (other)bulk RNA-seq

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