Author

Emanuele Alpi

Abzena (United Kingdom)ORCID 0000-0003-4822-9472Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:protein sequence· 1 Approach:statistical model· 1

Frequent Co-Authors

Abdulrahman HusseiniD· 1 shared Alan James BridgeiD· 1 shared Alex G. BatemaniD· 1 shared Alexandr IgnatchenkoiD· 1 shared Alistair MacDougall· 1 shared Alok MishraiD· 1 shared Andrea H AuchinclossiD· 1 shared Andrew CollinsiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Abdulrahman HusseinORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cell BiologybioRxivPreprintMay 20, 2025

SPROUTS_DB: an implemented database of contaminants for extracellular vesicle proteomics studies

Maria Gaetana Giovanna Pittalà, Loredana Leggio, Greta Paternò…·Rosaria Saletti

SPROUTS_DB catalogs serum-derived contaminants in extracellular vesicle proteomics to improve data reliability by distinguishing contaminants from true proteins.

DOI 10.1101/2025.05.20.655024

proteomicsexperimental assay

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BioinformaticsBioinformaticsPeer-reviewedDec 9, 2022

Annotation of biologically relevant ligands in UniProtKB using ChEBI

Elisabeth Coudert, Sébastien Géhant, Edouard de Castro…·Elena Speretta

The paper reannotates ligand binding sites in UniProtKB using ChEBI identifiers and improves search facilities for these annotations.

350 citationstop 1%

protein sequencestatistical model

𝕏 PostBluesky

BioinformaticsJournal of Proteome ResearchPeer-reviewedMay 13, 2019

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Pierre‐Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno…·Eric W. Deutsch

The paper introduces PEFF, a new format for proteomics data that enhances FASTA with metadata for sequence variants and PTMs, enabling better analysis in proteogenomics and top-down proteomics.

34 citations

proteomicsdatabase / resource

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