Author

Lavanya Karinje

Rice UniversityORCID 0009-0002-2212-7865Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Organism:bacteria (other)· 1 Research Focus:cell-cell communication· 1 Assay:CRISPR screen· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

James ChappelliD· 2 shared Jonathan J. SilbergiD· 2 shared Lauren B. StadleriD· 2 shared Lin FangiD· 1 shared Matthew J. DysartiD· 1 shared Shreyas NiphadkariD· 1 shared Sunil LaxmaniD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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2 shared papersSynthetic Biology

James ChappellORCID

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3 papers

Recent·Most cited

Synthetic BiologybioRxivPreprintJul 15, 2026

Storing >1 byte of information in 16S ribosomal RNA using orthogonal trans-splicing ribozymes

Matthew J. Dysart, Lin Fang, Lavanya Karinje…·Jonathan J. Silberg

The paper demonstrates how to use orthogonal trans-splicing ribozymes to store and report on multiple plasmid-encoded traits in microbial communities using RNA barcoding.

DOI 10.64898/2026.07.14.738544

E. colivirus

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Synthetic BiologybioRxivPreprintApr 21, 2026

Rational engineering enhances the signal and modularity of an RNA barcoding technology to track gene transfer in microbiomes

Lavanya Karinje, Jonathan J. Silberg, James Chappell, Lauren B. Stadler

The paper improves an RNA barcoding technology for tracking gene transfer in microbiomes by enhancing signal strength and modularity.

DOI 10.64898/2026.04.20.719664

metagenomicsexperimental assay

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Systems BiologyPLoS GeneticsPeer-reviewedMar 7, 2024

The PP2A-like phosphatase Ppg1 mediates assembly of the Far complex to balance gluconeogenic outputs and adapt to glucose depletion

Shreyas Niphadkar, Lavanya Karinje, Sunil Laxman

The paper identifies Ppg1 as a phosphatase that regulates Far complex assembly to maintain gluconeogenic outputs during glucose depletion in yeast.

8 citations

yeastexperimental assay

𝕏 PostBluesky