Author

Anima Sutradhar

University of EdinburghORCID 0009-0002-3621-7714Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1 Organism:yeast· 1

Frequent Co-Authors

Giovanni StracquadanioiD· 2 shared Christopher LennoniD· 1 shared Jonathan Pointon· 1 shared Tom EllisiD· 1 shared William M ShawiD· 1 shared Xinyu LuiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 9 mutual co-author links

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2 shared papersSynthetic Biology

Giovanni StracquadanioORCID

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2 papers

Recent·Most cited

Synthetic BiologybioRxivPreprintMar 22, 2024

Synthetic genome modules designed for programmable silencing of functions and chromosomes

Xinyu Lu, William M Shaw, Anima Sutradhar…·Tom Ellis

The paper demonstrates the design of synthetic genome modules for programmable silencing in yeast using dCreSIR, a system that controls gene expression through loxPsym sites.

2 citations

yeastwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 31, 2023

Transcriptome-wide meta-analysis of codon usage in Escherichia coli

Anima Sutradhar, Jonathan Pointon, Christopher Lennon, Giovanni Stracquadanio

The paper develops CUBSEQ, a meta-analysis pipeline to estimate codon usage bias in Escherichia coli using RNA-seq data from 6,763 samples, identifying 81 highly expressed genes with distinct codon usage patterns.

DOI 10.1101/2023.08.31.555696

E. colibulk RNA-seq

𝕏 PostBluesky