Author

Eugenio Perez‐Molphe‐Montoya

SIB Swiss Institute of BioinformaticsORCID 0009-0002-9592-9455Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:large language model· 1

Frequent Co-Authors

Christian von MeringiD· 2 shared Daniela GaioiD· 2 shared David PatschiD· 2 shared Janko TackmanniD· 2 shared Lukas MalfertheineriD· 2 shared Matteo Eustachio Peluso· 2 shared Nicolas C NäpfliniD· 2 shared Gregor RotiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Christian von MeringORCID

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2 papers

Recent·Most cited

The MicrobeAtlas database: Global trends and insights into Earth's microbial ecosystems

João F. Matias Rodrigues, Janko Tackmann, Lukas Malfertheiner, David Patsch, Eugenio Perez‐Molphe‐Montoya, Nicolas C Näpflin, Daniela Gaio, Gregor Rot, Mihai Danaila, Matteo Eustachio Peluso, Marija Dmitrijeva, Thomas Schmidt, Christian von Mering

MicrobeAtlas unifies over two million microbiome samples to enable cross-technology insights into microbial ecosystems and their global patterns.

Cell · Feb 25, 2026Peer-reviewedBioinformatics

Enhanced semantic classification of microbiome sample origins using Large Language Models (LLMs)

Daniela Gaio, Janko Tackmann, Eugenio Perez‐Molphe‐Montoya, Nicolas C Näpflin, David Patsch, Lukas Malfertheiner, Matteo Eustachio Peluso, Christian von Mering

This paper uses large language models to automate the annotation of microbiome sequencing records, achieving better performance than a keyword-based approach.

GigaScience · Jan 1, 2026Peer-reviewedBioinformatics