Author

Marija Dmitrijeva

ETH ZurichORCID 0000-0002-8561-6490Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Anna SintsovaiD· 1 shared Christian von MeringiD· 1 shared Daniela GaioiD· 1 shared David PatschiD· 1 shared Emma Marie Caroline SlackiD· 1 shared Eugenio Perez‐Molphe‐MontoyaiD· 1 shared Giorgia GreteriD· 1 shared Gregor RotiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

Anna SintsovaORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

The MicrobeAtlas database: Global trends and insights into Earth's microbial ecosystems

João F. Matias Rodrigues, Janko Tackmann, Lukas Malfertheiner, David Patsch, Eugenio Perez‐Molphe‐Montoya, Nicolas C Näpflin, Daniela Gaio, Gregor Rot, Mihai Danaila, Matteo Eustachio Peluso, Marija Dmitrijeva, Thomas Schmidt, Christian von Mering

MicrobeAtlas unifies over two million microbiome samples to enable cross-technology insights into microbial ecosystems and their global patterns.

Cell · Feb 25, 2026Peer-reviewedBioinformatics

Transcriptomic profiles of single-copy marker genes enable predicting bacterial growth states in microbial communities

Melanie L. Stäubli, Hans‐Joachim Ruscheweyh, Giorgia Greter, Marija Dmitrijeva, Samuel Miravet‐Verde, Markus Arnoldini, Wolf‐Dietrich Hardt, Emma Marie Caroline Slack, Anna Sintsova, Shinichi Sunagawa

The paper introduces a transcriptomic marker gene-based classifier to predict bacterial growth states across species in microbial communities.

bioRxiv · Aug 26, 2025 · PreprintMicrobiology