João F. Matias Rodrigues

MicrobeAtlas unifies over two million microbiome samples to enable cross-technology insights into microbial ecosystems and their global patterns.

The paper investigates community conservatism in microorganisms, finding it普遍存在 across environments and phyla, with specialized taxa showing stronger signals.

The paper analyzes pan-genomes of 155 prokaryotic species to assess how environmental and phylogenetic factors influence strain diversity and pan-genome features.

FlashWeave infers direct microbial interactions from large-scale metagenomic data, outperforming existing methods in speed and accuracy across diverse benchmarks.

MAPseq improves speed and accuracy of rRNA metagenomic analysis by providing faster and more consistent taxonomy classifications and OTU mappings.