Janko Tackmann

Susagi is a permutation-invariant denoising transformer that models microbial community stability from bacterial SSU rRNA gene embeddings, showing reliable predictions and capturing biological structure.

MicrobeAtlas unifies over two million microbiome samples to enable cross-technology insights into microbial ecosystems and their global patterns.

The paper investigates community conservatism in microorganisms, finding it普遍存在 across environments and phyla, with specialized taxa showing stronger signals.

This paper uses large language models to automate the annotation of microbiome sequencing records, achieving better performance than a keyword-based approach.

The paper investigates how microbiota origin affects transplant outcomes in soil, finding that habitat filtering, not origin, determines success.

FlashWeave infers direct microbial interactions from large-scale metagenomic data, outperforming existing methods in speed and accuracy across diverse benchmarks.

MAPseq improves speed and accuracy of rRNA metagenomic analysis by providing faster and more consistent taxonomy classifications and OTU mappings.