Author

Helena Cozzarini

ORCID 0009-0004-0282-3550Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Jens BerlipsiD· 2 shared Kevin M. EsveltiD· 2 shared Leonard Newton FoneriD· 2 shared Adam J. CloreiD· 1 shared André Rusch· 1 shared Andrés FábregaiD· 1 shared Andrew Bo LiuiD· 1 shared Andrew Chi-Chih YaoiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersBioinformatics

Jens BerlipsORCID

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2 papers

Recent·Most cited

Developing a Standard Definition for Sequences of Concern

Tessa Alexanian, Jacob Beal, Craig Bartling, Jens Berlips, Peter A. Carr, Adam J. Clore, Helena Cozzarini, James Diggans, Yorgo El Moubayed, Kevin M. Esvelt, Kevin Flyangolts, Leonard Newton Foner, Patrick A. Fullerton, Bryan T. Gemler, Caitlin A. D. Jagla, , Nicole E. Wheeler

The paper develops a rubric to define sequences of concern by analyzing test sequences and refining categorization through stakeholder review, reducing disputed categorization by 44.3% for controlled viruses.

Frontiers in Bioengineering and Biotechnology · Jun 4, 2026Peer-reviewedBioinformatics

Exact-match search with functional variant prediction enables automated DNA screening

Dana Gretton, Brian Wang, Rey Edison, Leonard Newton Foner, Jens Berlips, Theia Vogel, Martin Kysel, W Q Chen, Francesca Sage-Ling, Lynn Van Hauwe, Stephen Wooster, Helena Cozzarini, Ben Weinstein-Raun, Erika Alden DeBenedictis, Andrew Bo Liu, , Kevin M. Esvelt

The paper introduces a method combining exact-match search with functional variant prediction to automate DNA synthesis screening for controlled genes.

bioRxiv · Mar 20, 2024 · PreprintSynthetic Biology