Author

Yorgo El Moubayed

AgroParisTechORCID 0000-0002-4476-792XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:E. coli· 2 Approach:experimental assay· 2 Assay:DNA methylation· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Geoff S. BaldwiniD· 2 shared Jacob BealiD· 2 shared Aachen· 1 shared Aalto-Helsinki· 1 shared Abigail Sison· 1 shared Adam J. CloreiD· 1 shared AHUT_China· 1 shared Aix-Marseille· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersSynthetic Biology

Geoff S. BaldwinORCID

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3 papers

Recent·Most cited

Developing a Standard Definition for Sequences of Concern

Tessa Alexanian, Jacob Beal, Craig Bartling, Jens Berlips, Peter A. Carr, Adam J. Clore, Helena Cozzarini, James Diggans, Yorgo El Moubayed, Kevin M. Esvelt, Kevin Flyangolts, Leonard Newton Foner, Patrick A. Fullerton, Bryan T. Gemler, Caitlin A. D. Jagla, , Nicole E. Wheeler

The paper develops a rubric to define sequences of concern by analyzing test sequences and refining categorization through stakeholder review, reducing disputed categorization by 44.3% for controlled viruses.

Frontiers in Bioengineering and Biotechnology · Jun 4, 2026Peer-reviewedBioinformatics

Galaxy-SynBioCAD: Automated Pipeline for Synthetic Biology Design and Engineering

Joan Hérisson, Thomas Duigou, Melchior Du, Kenza Bazi-Kabbaj, Mahnaz Sabeti-Azad, Gizem Buldum, Olivier Telle, Yorgo El Moubayed, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Manish Kushwaha, Geoff S. Baldwin, Jean‐Loup Faulon

Galaxy-SynBioCAD provides an automated pipeline for synthetic biology design and engineering, achieving an 83% success rate in retrieving validated pathways.

Nature Communications · Aug 29, 2022Peer-reviewedSynthetic Biology

Robust Estimation of Bacterial Cell Count from Optical Density

Jacob Beal, Natalie G. Farny, Traci L. Haddock, Vinoo Selvarajah, Geoff S. Baldwin, Russell Buckley-Taylor, Markus C. Gershater, Daisuke Kiga, John P. Marken, Vishal Sanchania, Abigail Sison, Christopher Thomas Workman, iGEM Interlab Study Contributors, Aachen, Meryem Pehlivan, , Dror Aizik

The paper evaluates three OD calibration protocols for bacterial cell count estimation and recommends serial dilution of silica microspheres for its precision and compatibility with flow cytometry.

Communications Biology · Sep 17, 2020Peer-reviewedSynthetic Biology