Author

Shuyi Yang

University of South CarolinaORCID 0009-0004-1604-8874Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Organism:human· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Yen‐Yi HoiD· 2 shared Anderson BussingiD· 1 shared Daping FaniD· 1 shared Giampiero MarraiD· 1 shared Michelle Lynn BrinkmeieriD· 1 shared Sally Ann CamperiD· 1 shared Shannon William DavisiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 16 mutual co-author links

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2 shared papersGenomics

Yen‐Yi HoORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 28, 2026

NicheCorr: Identifying Niche-Specific Differential Gene Co-Expression in Spatial Transcriptomics

Shuyi Yang, Yen‐Yi Ho, Daping Fan

NicheCorr identifies niche-specific gene co-expression changes in spatial transcriptomics data, revealing spatially structured signaling interactions in liver and pancreatic cancer datasets.

DOI 10.64898/2026.10.23.761453

humanspatial transcriptomics

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GeneticsBMC BioinformaticsPeer-reviewedJul 29, 2025

TIME-CoExpress: Temporal Trajectory Modeling of Dynamic Gene Co-expression Patterns Using Single-Cell Transcriptomics Data

Shuyi Yang, Anderson Bussing, Giampiero Marra…·Yen‐Yi Ho

The paper introduces a copula-based method to model non-linear gene co-expression changes along temporal trajectories in scRNA-seq data, applied to study pituitary development in mice.

2 citations

mousescRNA-seq

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