Ross Barnowski

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

This paper describes the construction and usage of the Human Reference Atlas (HRA) v2.0, which integrates multiscale data across 36 organs and provides tools for analysis and visualization.

Generalized cell phenotyping for spatial proteomics with language-informed vision models

This paper introduces DeepCell Types, a language-informed vision model for spatial proteomics cell phenotyping that generalizes across diverse datasets and marker panels.

CellSAM: A Foundation Model for Cell Segmentation

Bounding boxes from a transformer detector let the Segment Anything Model segment cells automatically; one generalist model beats generalist Cellpose and matches inter-annotator agreement across mammalian, yeast and bacterial images.