Ali Oku

DECONVersation uses single-cell foundation model embeddings to improve bulk RNA-seq deconvolution by reducing batch effects and eliminating marker gene selection.

This paper develops an ancestrally inclusive patient-derived organoid platform for UCS that captures cancer cell plasticity and identifies therapeutic vulnerabilities.

This study characterizes the molecular differences in high-grade endometrial cancer across an ancestrally diverse cohort, identifying ancestry-associated mutations and immune microenvironment differences.