Author

Jules Vanaret

Aix Marseille Univ, CNRS, IBDM (UMR 7288), Turing Centre for Living Systems, Marseille, FranceORCID 0009-0004-6070-2263Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Alice GrosiD· 2 shared S. L. TliliiD· 2 shared Agathe Rostan· 1 shared Jean-François RupprechtiD· 1 shared Léo GuignardiD· 1 shared Marc Karnat· 1 shared Mehdi SaadaouiiD· 1 shared Philippe RoudotiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBiophysics

Alice GrosORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

A quantitative pipeline for whole-mount deep imaging and analysis of multi-layered organoids across scales

Alice Gros, Jules Vanaret, Valentin Dunsing, Agathe Rostan, Philippe Roudot, Pierre‐François Lenne, Léo Guignard, Sham Tlili

The paper develops a pipeline for deep imaging and analysis of multi-layered organoids, revealing gene expression patterns and nuclear morphology in gastruloids.

eLife · May 22, 2026Peer-reviewedBiophysics

DARE: Division Axis and Region Estimation from 2D and 3D Time-Lapse Images

Romain Karpinski, Alice Gros, Marc Karnat, Qazi Saaheelur Rahaman, Jules Vanaret, Mehdi Saadaoui, S. L. Tlili, Jean-François Rupprecht

The paper introduces a two-stage framework for detecting cell divisions in 2D and 3D time-lapse images using segmentation and regression models, achieving high accuracy with efficient architectures.

bioRxiv · Feb 5, 2024 · PreprintBiophysics