Author

James W. Reinsch

University of OregonORCID 0009-0004-6102-6594Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 3 Organism:yeast· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:E. coli· 1

Frequent Co-Authors

David M. GarciaiD· 3 shared Kristin S. KoutmouiD· 2 shared Margaret L. BarryiD· 2 shared Miten JainiD· 2 shared Robin L. Abu-ShumaysiD· 2 shared Ethan A. Shaw (23811802)iD· 1 shared Lauren E. BarnesiD· 1 shared Maddy P. ZamecnikiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersMolecular Biology

David M. GarciaORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 22, 2026

Pseudouridylation landscape across 42 nuclear-encoded S. cerevisiae tRNAs

Margaret L. Barry, Robin L. Abu-Shumays, Lauren E. Barnes…·David M. Garcia

The paper identifies 21 novel pseudouridine sites in S. cerevisiae tRNAs using DRS and BACS, and maps their modifying enzymes.

2 citations

yeastlong-read sequencing

𝕏 PostBluesky

Molecular BiologyNucleic Acids ResearchPeer-reviewedJul 14, 2026

Toward a comprehensive modification landscape of yeast mitochondrial tRNAs using Nanopore direct RNA sequencing and Dihydrouridine sequencing

James W. Reinsch, David M. Garcia

The paper maps base modifications in yeast mitochondrial tRNAs using Nanopore DRS and tD-seq, identifies enzymes responsible for specific modifications, and reveals interdependent modification circuits.

4 citationstop 3%

yeastlong-read sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintJun 9, 2026

tRNA isodecoder analysis using Nanopore ionic current signals and deep learning

Stuart Akeson, Pooria Daneshvar Kakhaki, Neda Ghohabi Esfahani…·Miten Jain

The paper introduces tRNAZAP, a deep learning method using nanopore ionic current signals to classify tRNA isodecoders, achieving better alignment results than BWA-MEM in E. coli and S. cerevisiae.

3 citations

𝕏 PostBluesky