Author

Sion Kim

University of MichiganORCID 0009-0004-7989-2415Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:Hi-C· 3 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Minji KimiD· 3 shared Alan P. BoyleiD· 1 shared Alexander VargoiD· 1 shared Bluma J. LeschiD· 1 shared Bradley Robert CairnsiD· 1 shared Henry B. Zhang· 1 shared Joseph T Jackson· 1 shared Jun Z. LiiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Minji KimORCID

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Author profile →

3 papers

Recent·Most cited

3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis

Mashiat Rabbani, Zachary Apell, Timothy J. Parnell, Lindsay Moritz, Sion Kim, Sowmya Srinivasan, Ritvija Agrawal, Alexander Vargo, Peter Orchard, Wenxin Xie, Lydia Freddolino, Alan P. Boyle, Jun Z. Li, Bluma J. Lesch, Bradley Robert Cairns, , Saher Sue Hammoud

The paper defines a 3D chromatin compartment blueprint that programs histone-to-protamine exchange during spermiogenesis using ATAC-seq, CUT&Tag, and Hi-C.

bioRxiv · Mar 12, 2026 · PreprintGenomics

HiChIA-Rep quantifies the similarity between enrichment-based chromatin interactions datasets

Sion Kim, Joseph T Jackson, Henry B. Zhang, Minji Kim

HiChIA-Rep quantifies similarity between chromatin interaction datasets by integrating 1D and 2D signals, distinguishing replicates and factors better than existing tools.

bioRxiv · Feb 3, 2026 · PreprintBioinformatics

MIA-Jet: Multi-scale Identification Algorithm of Chromatin Jets

Sion Kim, Minji Kim

MIA-Jet detects chromatin jets in 3D genome data, revealing their dependence on cohesin and CTCF, and outperforms existing methods across multiple species and datasets.

bioRxiv · Aug 27, 2025 · PreprintBioinformatics