Author

Alexander Vargo

University of MichiganORCID 0000-0001-5930-8841Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:scRNA-seq· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:CUT&Tag· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

Jun Z. LiiD· 2 shared Saher Sue HammoudiD· 2 shared Alan P. BoyleiD· 1 shared Anna C. GilbertiD· 1 shared Ariella ShikanoviD· 1 shared Asgerally T. FazleabasiD· 1 shared Bethany B. MooreiD· 1 shared Bluma J. LeschiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersGenomics

Jun Z. LiORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 12, 2026

3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis

Mashiat Rabbani, Zachary Apell, Timothy J. Parnell…·Saher Sue Hammoud

The paper defines a 3D chromatin compartment blueprint that programs histone-to-protamine exchange during spermiogenesis using ATAC-seq, CUT&Tag, and Hi-C.

1 citation

mouseATAC-seq

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Cell BiologyProceedings of the National Academy of SciencesPeer-reviewedOct 29, 2024

Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women

Nicole D. Ulrich, Alexander Vargo, Qianyi Ma…·Saher Sue Hammoud

This paper presents a single-cell RNA sequencing atlas of the human uterus, identifying 39 cell subtypes and proposing a consensus annotation system, while highlighting dynamic changes and potential progenitor cells across menstrual cycle phases.

21 citations

humanscRNA-seq

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GenomicsbioRxivPreprintJun 23, 2019

Comparison of marker selection methods for high throughput scRNA-seq data

Anna C. Gilbert, Alexander Vargo

The paper evaluates marker selection methods for scRNA-seq data and introduces a fast, mathematically grounded method for multi-class marker selection.

2 citations

scRNA-seqstatistical model

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