Author

Ana Caroline Silas Rodrigues

Universidade Federal do Rio de JaneiroORCID 0009-0005-4934-2874Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:large language model· 1 Organism:non-human primate· 1

Frequent Co-Authors

Alessandra Leda ValverdeiD· 2 shared Carolaine da Silva de AraujoiD· 2 shared Magno JunqueiraiD· 2 shared Fábio César Sousa NogueiraiD· 1 shared Gabrielle Rodrigues de SouzaiD· 1 shared Marília Zaluar P. GuimarãesiD· 1 shared Milan S. G. KeirsebelikiD· 1 shared Rafael Maciel‐de‐FreitasiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Alessandra Leda ValverdeORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 27, 2026

Asking the Data: Conversational Interrogation of LC-MS/MS Proteomics Data Sets with an LLM Agent

Carolaine da Silva de Araujo, Milan S. G. Keirsebelik, Ana Caroline Silas Rodrigues…·Magno Junqueira

The paper introduces a conversational framework using an LLM agent to interrogate proteomics data sets, identifying issues in four LC-MS/MS datasets and demonstrating its feasibility in reanalyzing data.

DOI 10.64898/2026.10.22.760949

proteomicslarge language model

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BiochemistrybioRxivPreprintOct 21, 2026

Sample Preparation and Homology-Driven Search Shape the First Holobiont Proteome of the Marine Sponge Viles ophiraphidites (formerly Topsentia ophiraphidites)

Carolaine da Silva de Araujo, Ana Caroline Silas Rodrigues, Gabrielle Rodrigues de Souza…·Magno Junqueira

The paper compares sample preparation workflows and homology-driven search strategies to characterize the proteome of a marine sponge, finding S-Trap with homology layers provides the most comprehensive and consistent results.

DOI 10.64898/2026.10.20.760564

non-human primateproteomics

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