Author

Carlos Vasquez-Rios

University of British ColumbiaORCID 0009-0006-5521-4243Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:scRNA-seq· 2 Research Focus:software / tool· 2 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1

Frequent Co-Authors

Jiarui DingiD· 2 shared Branden J. LynchiD· 1 shared David D. HuntsmaniD· 1 shared Ding Ma· 1 shared J. Maxwell DouglasiD· 1 shared Jacky Chun Hei YiuiD· 1 shared Jeffrey NiuiD· 1 shared Minuk MaiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Jiarui DingORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 27, 2026

Utanos: A general-purpose shallow whole-genome sequencing analysis workflow identifies interpretable copy number signatures

J. Maxwell Douglas, Branden J. Lynch, Jacky Chun Hei Yiu…·Yongjin Park

Utanos provides a modular workflow for analyzing shallow whole-genome sequencing data to detect copy number aberrations and signatures.

DOI 10.64898/2026.07.22.739009

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsCell Reports MethodsPeer-reviewedOct 28, 2025

Single-cell multiomics data integration and generation with scPairing

Jeffrey Niu, Carlos Vasquez-Rios, Jiarui Ding

scPairing generates multiomics data from single cells using deep learning, capturing biological structures and enabling trimodal data creation.

11 citations

scRNA-seqscATAC-seq

𝕏 PostBluesky

ImmunologybioRxivPreprintJan 13, 2025

Repertoire-level generation of T-cell epitopes with a large-scale generative transformer

Minuk Ma, Wilson Tu, Carlos Vasquez-Rios, Jiarui Ding

EpitopeGen generates T-cell epitopes from TCR sequences using a transformer model, outperforming baselines and identifying antigen-specific T cells in cancer and COVID-19.

2 citations

𝕏 PostBluesky