Author

Jalaja Madhusudhanan

University of ViennaORCID 0009-0007-9535-941XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Assay:spatial transcriptomics· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Charles FieseleriD· 2 shared Manuel ZimmeriD· 2 shared Anton ParinoviD· 1 shared Itamar LeviD· 1 shared Siegfried Schwartz· 1 shared Zihao ZhaiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

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2 shared papersNeuroscience

Charles FieselerORCID

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2 papers

Recent·Most cited

NeurosciencebioRxivPreprintSep 8, 2026

Flexible modulation of neuronal population dynamics drives variable decision-making in C. elegans

Jalaja Madhusudhanan, Anton Parinov, Charles Fieseler, Manuel Zimmer

The paper shows that decision-making variability in C. elegans arises from slow modulation of brain states rather than random noise, using calcium imaging and optogenetics.

DOI 10.64898/2026.09.03.749061

C. elegansimaging

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BioinformaticsbioRxivPreprintNov 10, 2025

BarlowTrack: A Self-Supervised Framework for Zero-Shot Multi-Object Cell Tracking

Charles Fieseler, Itamar Lev, Jalaja Madhusudhanan…·Manuel Zimmer

This paper introduces BarlowTrack, a self-supervised cell tracking framework that achieves zero-shot accuracy across conditions and labs for neuronal time series in C. elegans.

DOI 10.1101/2025.11.10.687595

C. elegansspatial transcriptomics

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