Vsevolod Viliuga

The paper identifies small-molecule activators of the Staphylococcus aureus ClpC/ClpP protease through high-throughput screening and characterizes their binding sites.

ABAG-Rank improves model selection for AlphaFold3-predicted antibody-antigen complexes by learning to rank structural ensembles using geometric descriptors and confidence scores.

This study evaluates refolding metrics in protein design, showing they are limited by evolutionary information and structural flexibility, reducing their reliability for filtering design candidates.

ColBuilder generates atomistic models of crosslinked collagen fibrils and validates them through molecular dynamics simulations.