Sophia J. Pribus

The paper identifies high attention sites in protein language models that predict functional and pathogenic regions in proteins.

ecDNAInspector identifies high-confidence ecDNA structures from WGS data, linking them to clinical and molecular features in breast cancer.

This study integrates spatial and multi-omic data from bladder cancer patients to show L1 retrotransposition drives genomic instability, ecDNA formation, and a viral mimicry response.