Author

Ted Choi

Predictive Biology (United States)ORCID 0009-0009-3274-4200Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Organism:mouse· 4 Approach:statistical model· 4 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Daniel A. SkellyiD· 4 shared Laura G. ReinholdtiD· 4 shared Selcan C. AydiniD· 4 shared Steven C. MungeriD· 4 shared Christopher L. BakeriD· 3 shared Matthew T PankratziD· 3 shared Alexander R. StantoniD· 2 shared Anne CzechanskiiD· 2 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenetics

Daniel A. SkellyORCID

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4 papers

Recent·Most cited

GeneticsStem Cell ReportsPeer-reviewedJun 9, 2026

Chromosome X Dosage Modulates Development of Aneuploidy in Genetically Diverse Mouse Embryonic Stem Cells

Alexander R. Stanton, Selcan C. Aydin, Daniel A. Skelly…·Martín F. Pera

The paper identifies that X chromosome dosage influences aneuploidy development in mouse embryonic stem cells, with XO and XY lines showing higher aneuploidy rates than XX lines.

2 citations

mousebulk RNA-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintJan 24, 2025

Cross cell-type systems genetics reveals the influence of eQTL at multiple points in the developmental trajectory of mouse neural progenitor cells

Selcan C. Aydin, Daniel A. Skelly, Hannah B. Dewey…·Steven C. Munger

The paper identifies eQTL in mouse neural progenitor cells and shows their effects on gene regulation across developmental stages.

DOI 10.1101/2025.01.24.634514

mousebulk RNA-seq

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GeneticsCell GenomicsPeer-reviewedMar 23, 2023

Genetic dissection of the pluripotent proteome through multi-omics data integration

Selcan C. Aydin, Duy T. Pham, Tian Zhang…·Steven C. Munger

This study integrates multi-omics data from mouse embryonic stem cells to identify genetic drivers of proteome variability and uncover regulatory mechanisms in pluripotency.

18 citations

mouseproteomics

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GenomicsbioRxivPreprintFeb 17, 2019

Genetic variation influences pluripotent ground state stability in mouse embryonic stem cells through a hierarchy of molecular phenotypes

Daniel A. Skelly, Anne Czechanski, Candice Byers…·Laura G. Reinholdt

The paper identifies genetic variants influencing metastability in mouse embryonic stem cells by analyzing gene expression and chromatin accessibility in 185 genetically diverse cells.

9 citations

mousebulk RNA-seq

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