Author

Jon Doenier

Stanford MedicineORCID 0009-0009-4576-0082Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1 Organism:multiple species· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ellen YehiD· 2 shared Sarah FrailiD· 2 shared Adrien BurlacotiD· 1 shared Dimitri TolleteriD· 1 shared Giovanni FinazziiD· 1 shared Melissa C. Steele-OgusiD· 1 shared S. L. Y. MouliniD· 1 shared Shou‐Ling XuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersMicrobiology

Ellen YehORCID

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2 papers

Recent·Most cited

MicrobiologyProceedings of the National Academy of SciencesPeer-reviewedJun 17, 2026

A genome-wide CRISPR screen reveals how diatoms thrive in dynamic light

Jon Doenier, Dimitri Tolleter, Sarah Frail…·Ellen Yeh

A genome-wide CRISPR screen in diatoms identifies genes critical for survival under different light conditions, including a novel gene involved in cyclic electron flow.

3 citationstop 5%

multiple speciesgenetic perturbation / CRISPR

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Evolutionary BiologyProceedings of the National Academy of SciencesPeer-reviewedAug 12, 2025

Genomes of nitrogen-fixing eukaryotes reveal a non-canonical model of organellogenesis

Sarah Frail, Melissa C. Steele-Ogus, Jon Doenier…·Ellen Yeh

The paper analyzes genomes of nitrogen-fixing eukaryotes to show that endosymbionts can function as integral cell compartments without significant genetic integration.

12 citationstop 1%

whole-genome sequencingexperimental assay

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