An accumulation-of-evidence task using visual pulses for mice navigating in virtual reality
Lucas PintoiD, Sue Ann KoayiD, Ben Engelhard, Alice M. YooniD, Ben DeverettiD, Stephan Y. ThibergeiD, Ilana B. WitteniD, David W. TankiD, Carlos D. BrodyiD
Abstract
The gradual accumulation of sensory evidence is a crucial component of perceptual decision making, but its neural mechanisms are still poorly understood. Given the wide availability of genetic and optical tools for mice, they can be useful model organisms for the study of these phenomena; however, behavioral tools are largely lacking. Here, we describe a new evidence-accumulation task for head-fixed mice navigating in a virtual reality environment. As they navigate down the stem of a virtual T-maze, they see brief pulses of visual evidence on either side, and retrieve a reward on the arm with the highest number of pulses. The pulses occur randomly with Poisson statistics, yielding a diverse yet well-controlled stimulus set, making the data conducive to a variety of computational approaches. A large number of mice of different genotypes were able to learn and consistently perform the task, at levels similar to rats in analogous tasks. They are sensitive to side differences of a single pulse, and their memory of the cues is stable over time. Moreover, using non-parametric as well as modeling approaches, we show that the mice indeed accumulate evidence: they use multiple pulses of evidence from throughout the cue region of the maze to make their decision, albeit with a small overweighting of earlier cues, and their performance is affected by the magnitude but not the duration of evidence. Additionally, analysis of the mice's running patterns revealed that trajectories are fairly stereotyped yet modulated by the amount of sensory evidence, suggesting that the navigational component of this task may provide a continuous readout correlated to the underlying cognitive variables. Our task, which can be readily integrated with state-of-the-art techniques, is thus a valuable tool to study the circuit mechanisms and dynamics underlying perceptual decision making, particularly under more complex behavioral contexts.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 93
- FWCI
- 6.55
- Field percentile
- top 2%
- Organism
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Visual evidence accumulation guides decision-making in unrestrained mice
Onyekachi Odoemene, Sashank Pisupati, … Anne K. Churchland·Journal of NeurosciencePeer-reviewed·Oct 15, 2018
- Neural Correlates of Cognition in Primary Visual versus Neighboring Posterior Cortices during Visual Evidence-Accumulation-based Navigation
Sue Ann Koay, Stephan Y. Thiberge, … David W. Tank·bioRxiv·Mar 6, 2019
- Visual uncertainty and task demands shape active sensing strategies in mice
Celia Benquet, Thomas T. J. Sainsbury, … Mackenzie Weygandt Mathis·Current BiologyPeer-reviewed·Jun 30, 2026
- Sensory evidence accumulation using optic flow in a naturalistic navigation task
Panos Alefantis, Kaushik J. Lakshminarasimhan, … Dora E. Angelaki·Journal of NeurosciencePeer-reviewed·May 31, 2022
- Probabilistic discrimination of relative stimulus features in mice
Dmitry R. Lyamzin, Ryo Aoki, … Andrea Benucci·Proceedings of the National Academy of SciencesPeer-reviewed·Jul 23, 2021
- Dynamics of visual perceptual decision-making in freely behaving mice
Wen-Kai You, Shreesh P. Mysore·eneuroPeer-reviewed·Mar 1, 2022