bioRxivNeurosciencePreprint
Crosstalk between biochemical signaling and trafficking determines AMPAR dynamics in synaptic plasticity
Abstract
Synaptic plasticity involves the modification of both biochemical and structural components of neurons. Many studies have revealed that the change in the number density of the glutamatergic receptor AMPAR at the synapse is proportional to synaptic weight update; increase in AMPAR corresponds to strengthening of synapses while decrease in AMPAR density weakens synaptic connections. The dynamics of AMPAR are thought to be regulated by upstream signaling, primarily the calcium-CaMKII pathway, trafficking to and from the synapse, and influx from extrasynaptic sources. Here, we have developed a set of models using compartmental ordinary differential equations to systematically investigate contributions of signaling and trafficking variations on AMPAR dynamics at the synaptic site. We find that the model properties including network architecture and parameters significantly affect the integration of fast upstream species by slower downstream species. Furthermore, we predict that the model outcome, as determined by bound AMPAR at the synaptic site, depends on (a) the choice of signaling model (bistable CaMKII or monostable CaMKII dynamics), (b) trafficking versus influx contributions, and (c) frequency of stimulus. Therefore, AMPAR dynamics can have unexpected dependencies when upstream signaling dynamics (such as CaMKII and PP1) are coupled with trafficking modalities.
- Citations
- 2
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Spatiotemporal modeling reveals geometric dependence of AMPAR dynamics on dendritic spine morphology
Miriam K. Bell, Christopher T. Lee, Padmini Rangamani·The Journal of PhysiologyPeer-reviewed·Nov 3, 2022
- Dendritic spine neck plasticity controls synaptic expression of long-term potentiation
Rahul Gupta, Cian O’Donnell·bioRxiv·Jan 27, 2023
- A unified computational model for cortical post-synaptic plasticity
Tuomo Mäki‐Marttunen, Nicolangelo L. Iannella, … Kim T. Blackwell·eLifePeer-reviewed·Jul 30, 2020
- Dynamic extracellular interactions with AMPA receptors
Hana L. Goldschmidt, Casey N. Barber, … Richard L. Huganir·Proceedings of the National Academy of SciencesPeer-reviewed·Nov 17, 2025
- Computational modeling of AMPK and mTOR crosstalk in glutamatergic synapse calcium signaling
Allen Leung, Padmini Rangamani·npj Systems Biology and ApplicationsPeer-reviewed·Jul 17, 2023
- Vesicular acidification modulates the synaptic current: a hybrid diffusion reaction model analysis
Roi Bar‐On, Ingo H. Greger, David Holcman·bioRxiv·Apr 28, 2026