The FASEB JournalDevelopmental BiologyPeer-reviewed journal article
Transcriptomic analysis of bone and fibrous tissue morphogenesis during digit tip regeneration in the adult mouse
Feini QuiD, Ilan C. PalteiD, Paul M. GontarziD, Bo ZhangiD, Farshid GuilakiD
Abstract
Humans have limited regenerative potential of musculoskeletal tissues following limb or digit loss. The murine digit has been used to study mammalian regeneration, where stem/progenitor cells (the blastema) regrow the digit tip after distal, but not proximal, amputation. However, the molecular mechanisms responsible for this response remain to be determined. We hypothesized that regeneration is initiated and maintained by a gene regulatory network that recapitulates aspects of limb development, whereas a non-regenerative response exhibits fibrotic wound healing and minimal bone remodeling. To test these hypotheses, we evaluated the spatiotemporal formation of bone and fibrous tissues after level-dependent amputation of the murine terminal phalanx and quantified the transcriptome of the repair tissue. We show that digit regeneration is a level-dependent and spatiotemporally controlled process, with distal and proximal amputations showing significant differences in gene expression and tissue regrowth over time. Regeneration is characterized by the transient upregulation of genes that direct skeletal system development and limb morphogenesis, including distal Hox genes. By identifying the molecular pathways regulating regeneration, this work will lead to novel therapies that restore complex tissues after injury.\n\nSummary StatementMurine digit tip regeneration after distal amputation is orchestrated through a transient, limb-specific gene network by blastema cells. Proximal amputation activates an alternate transcriptional program that results in scar formation.
- organism: mouse
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 21
- FWCI
- 0.81
- Field percentile
- top 33%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Selective Treg recruitment to bone remodeling niches is required for digit tip regeneration
Chunyan Fu, Charles Wynter, … Kailin R. Mesa·bioRxiv·May 8, 2026
- Cellular heterogeneity and lineage restriction during mouse digit tip regeneration at single cell resolution
Gemma L. Johnson, Erick J. Masias, Jessica A. Lehoczky·Developmental CellPeer-reviewed·Feb 1, 2020
- Mouse digit AAV gene delivery into fibroblasts regulates regenerative outcome
Vivian Jou, Scott D. Semelsberger, … Jessica A. Lehoczky·Science AdvancesPeer-reviewed·Jan 7, 2026
- Transcriptomic Landscape and Immune Microenvironment AroundWound Bed Define Regenerative versus Non-regenerative Outcomesin Mouse Digit Amputation
Archana Prabahar, Connie S. Chamberlain, … Peng Jiang·bioRxiv·Dec 4, 2024
- The nail mesenchyme creates a regeneration-specific ligand environment that orchestrates mammalian regeneration versus fibrotic wound healing
Sruthi Purushothaman, Sandeep Saxena, … Freda D. Miller·bioRxiv·Apr 22, 2026
- Enhancer-directed gene delivery for digit regeneration based on conserved epidermal factors
David A. Brown, Katja K. Koll, … Kenneth D. Poss·Proceedings of the National Academy of SciencesPeer-reviewed·Apr 14, 2026