Time-conditional properties of branches in coalescent gene trees
Abstract
Coalescent gene trees have proven to be a powerful framework for formulating and solving problems in population genetics both in theory and practice. Using them, geneticists have been able to generate expectations for many attributes of a random sample of genotypes from a population given a model of the history of the population. This paper derives three new properties of coalescent gene trees that will help characterize the present-day impacts of historical events. Considering a single branch sampled at a given time ts in the past, it presents distributions describing 1) the length of time a branch sampled ts generations in the past had existed at the time of sampling, 2) the length of time that branch continues from time ts towards the present, and3) the the probability that the branch is ancestral to x individuals in a modern sample.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 1
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A discrete approach to the external branches of a Kingman coalescent tree. Theoretical results and practical applications
F. Disanto, T. Wiehe·bioRxiv·Oct 25, 2019
- Approximations to the expectations and variances of ratios of tree properties under the coalescent
Egor Lappo, Noah A. Rosenberg·G3 Genes Genomes GeneticsPeer-reviewed·Aug 11, 2022
- Bayesian Inference of Joint Coalescence Times for Sampled Sequences
Helmut Simon, Gavin A. Huttley·bioRxiv·Jul 23, 2021
- Distribution of gene tree histories under the coalescent model with gene flow
Yuan Tian, Laura S. Kubatko·bioRxiv·Aug 10, 2015
- The distribution of the time to the most recent pairwise genetic common ancestor of a set of sampled genomes
Zehui Zhao, Rohan S. Mehta, Daniel B. Weissman·GeneticsPeer-reviewed·Nov 19, 2025
- The bounded coalescent model: conditioning a genealogy on a minimum root date
J. Carson, A. Ledda, … X. Didelot·bioRxiv·Jan 4, 2022