Multi-ancestry genome-wide association study improves resolution of genes, pathways and pleiotropy for lung function and chronic obstructive pulmonary disease
Nick R. G. ShrineiD, Abril G. IzquierdoiD, Jing CheniD, Richard J. PackeriD, Robert J. Hall, Anna L. GuyattiD, Chiara BatiniiD, Rebecca J. Thompson, Chandan K Pavuluri, Vidhi Malik, Brian D. HobbsiD, Matthew R. MolliD, Wonji KimiD, Ruth Tal‐SingeriD, Per Sigvald Bakke, Katherine A. FawcettiD, Catherine JohniD, Kayesha ColeyiD, Noemi Nicole Piga, Alfred PozarickijiD, Kuang LiniD, Iona Y. MillwoodiD, Zhengming CheniD, Liming LiiD, China Kadoorie Biobank Collaborative Group, , Data Management and Computing Infrastructure group
Abstract
Lung function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry GWAS meta-analysis of lung function to date, comprising 580,869 participants, 1020 independent association signals identified 559 genes supported by [≥]2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score (GRS) showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies (PheWAS) for selected associated variants, and trait and pathway-specific GRS to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.
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