bioRxivBiochemistryPreprint
Biophysical characterization and analysis of a mesophilic chorismate mutase from B. pumilus
R. S. Wilkins, B. A. Lund, G. V. Isaksen, J. Aqvist, B. O. Brandsdal
Abstract
Chorismate mutases have extensively been used as computational benchmarking systems for enzyme catalysis, yet the roles entropy and enthalpy play in catalysis are still not fully understood. Thus, it is important to better understand these enzymes for potential research or industrial applications. Here, we report the first crystal structure and kinetic characterization of a chorismate mutase from Bacillus pumilus. This enzyme exhibits a high degree of similarity to a known mesophilic chorismate mutase from Bacillus subtilis. Using this crystal structure, we further employ EVB/MD simulations to construct Arrhenius plots, allowing us to extract thermodynamic activation parameters. Overall, this study provides new insights into the structural and functional features of the B. pumilus chorismate mutase and highlights its potential as a valuable enzyme for biocatalytic and biotechnological applications.
- organism: bacteria (other)
- assay: structural biology
- research focus: protein folding & dynamics
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- What drives chorismate mutase to top performance? Insights from a combined in silico and in vitro study
H. V. Thorbjornsrud, L. Bressan, … U. Krengel·BiochemistryPeer-reviewed·Jan 27, 2023
- Investigating the Consequences of Non-active site Mutations on the Structure, Function and Dynamics of the Molten Globule Enzyme Monomeric Chorismate Mutase
Shrutidhara Biswas, Pamarthi Gangadhar, … Rajaram Swaminathan·bioRxiv·Apr 14, 2026
- A structural perspective on the temperature-dependent activity of enzymes
Matthew J. McLeod, Sarah A. E. Barwell, … Robert Edward Thorne·StructurePeer-reviewed·Mar 22, 2025
- Evolution of an enzyme conformational ensemble guides design of an efficient biocatalyst
A. Broom, R. V. Rakotoharisoa, … R. A. Chica·bioRxiv·Mar 19, 2020
- Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles
F. Yabukarski, J. T. Biel, … D. Herschlag·bioRxiv·Jun 4, 2020
- Evolution-based design of chorismate mutase enzymes
W. P. Russ, M. Figliuzzi, … R. Ranganathan·bioRxiv·Apr 1, 2020