Silc1 long noncoding RNA is an immediate-early gene promoting efficient memory formation

Abstract

Long noncoding RNAs (lncRNAs) are expressed in many brain circuits and neuronal types, but their significance to normal brain functions has remained largely unknown. Here, we study the functions in the central nervous system of Silc1, a lncRNA we previously showed to be important for neuroregeneration in the peripheral nervous system. We found that Silc1 is rapidly and strongly induced upon stimulation in the hippocampus and is required for efficient spatial learning. Silc1 production is important for the induction of Sox11 (its cis-regulated target gene) throughout the CA1-CA3 regions and the proper expression of key Sox11 target genes. Consistent with its newly found role in neuronal plasticity, we find that during aging and in models of Alzheimers disease Silc1 levels decline. Overall, we uncover a novel plasticity pathway, in which Silc1 acts as an immediate-early gene to activate Sox11 to induce a neuronal growth-associated transcriptional program important for memory formation.