Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for Phylogenetics
Simone MariniiD, Carla N. MavianiD, Alberto RivaiD, Mattia ProsperiiD, Marco SalemiiD, Brittany Rife MagalisiD
Abstract
TARDiS for Philogenetics is a novel tool for optimal genetic sub-sampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. TARDiS, along with example data sets and a user manual, is available at https://github.com/smarini/tardis-phylogenetics
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