Alberto Riva

R2T2P integrates transcriptomics and proteomics data to study FSHD, revealing novel RNAs and their impact on translation and protein levels.

This study shows KDM6A regulates immune response genes in multiple myeloma by activating NLRC5 and CIITA, and its loss reduces MHC expression, which can be reversed by HDAC3 inhibitors.

The paper introduces DeepDynaTree, a phylogenetic-informed graph deep learning model to classify dynamic transmission clusters in infectious disease epidemics, achieving higher accuracy than existing methods.

This study shows that HIRA-mediated H3.3 incorporation at enhancers regulates androgen receptor (AR) and BRD4 complex assembly, affecting transcription in prostate cancer.

TARDiS optimizes viral genome subsampling by balancing genetic diversity and temporal distribution to improve phylogenetic analysis.

The paper introduces methylscaper, an R/Shiny app for visualizing DNA methylation and nucleosome occupancy in single-molecule and single-cell data, showing its ability to identify biologically relevant chromatin features.

Long-read assemblies of an inbred cannabis trio plus whole-genome sequencing of 40 cultivars link cannabinoid synthase gene deletions to chemotype and associate CsTLP1 loss with powdery mildew susceptibility.