Author

S. Wagle

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 2 Microbiology· 1 Pathology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Organism:virus· 2 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1 Assay:imaging· 1 Assay:metagenomics· 1

Frequent Co-Authors

A. Markin· 3 shared T. K. Anderson· 3 shared O. Eulenstein· 2 shared A. C. Thompson· 1 shared A. K. Swinford· 1 shared A. L. Baker· 1 shared A. L. Vincent Baker· 1 shared B. B. Neupane· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersEvolutionary Biology

A. Markin

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle

T.-Q. Nguyen, C. Hutter, A. Markin, M. N. Thomas, K. Lantz, M. L. Killian, G. M. Janzen, S. Vijendran, S. Wagle, B. Inderski, D. R. Magstadt, G. Li, D. G. Diel, E. A. Frye, K. M. Dimitrov, , T. K. Anderson

This study identifies a reassortment event in wild birds leading to HPAI A(H5N1) infection in cattle and highlights the risk of virus spread through asymptomatic cattle to humans.

bioRxiv · May 1, 2024 · PreprintMicrobiology

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny

A. Markin, S. Wagle, S. Grover, A. L. Vincent Baker, O. Eulenstein, T. K. Anderson

PARNAS selects representative taxa from large phylogenies to cover diversity efficiently, applied to influenza A virus data to inform vaccine design.

bioRxiv · Sep 12, 2022Evolutionary Biology

RF-Net 2: Fast Inference of Virus Reassortment and Hybridization Networks

A. Markin, S. Wagle, T. K. Anderson, O. Eulenstein

RF-Net 2 improves virus reassortment and hybridization network inference by handling more reticulations and providing error correction, validated on influenza A virus data.

bioRxiv · May 5, 2021Evolutionary Biology

A smartphone microscope method for simultaneous detection of (oo)cyst of Cryptosporodium and Giardia

R. Shrestha, R. Duwal, S. Wagle, S. Pokhrel, B. Giri, B. B. Neupane

This paper develops a smartphone-based microscope method to detect Cryptosporodium and Giardia (oo)cysts in vegetables and water, achieving comparable recovery rates to commercial microscopes.

bioRxiv · Apr 9, 2020 · PreprintPathology