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Testing pseudo-linear models of responses to naturalscenes in primate retina

Alexander Heitman, Nora BrackbilliD, Martin GreschneriD, Alexander SheriD, Alan M LitkeiD, E. J. ChichilniskyiD

Abstract

A central goal of systems neuroscience is to develop accurate quantitative models of how neural circuits process information. Prevalent models of light response in retinal ganglion cells (RGCs) usually begin with linear filtering over space and time, which reduces the high-dimensional visual stimulus to a simpler and more tractable scalar function of time that in turn determines the model output. Although these pseudo-linear models can accurately replicate RGC responses to stochastic stimuli, it is unclear whether the strong linearity assumption captures the function of the retina in the natural environment. This paper tests how accurately one pseudo-linear model, the generalized linear model (GLM), explains the responses of primate RGCs to naturalistic visual stimuli. Light responses from macaque RGCs were obtained using large-scale multi-electrode recordings, and two major cell types, ON and OFF parasol, were examined. Visual stimuli consisted of images of natural environments with simulated saccadic and fixational eye movements. The GLM accurately reproduced RGC responses to white noise stimuli, as observed previously, but did not generalize to predict RGC responses to naturalistic stimuli. It also failed to capture RGC responses when fitted and tested with naturalistic stimuli alone. Fitted scalar nonlinearities before and after the linear filtering stage were insufficient to correct the failures. These findings suggest that retinal signaling under natural conditions cannot be captured by models that begin with linear filtering, and emphasize the importance of additional spatial nonlinearities, gain control, and/or peripheral effects in the first stage of visual processing.

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Abstract summary

Verified abstract synthesis

Claude Opus 5.5 · xhigh effort · 18 Oct 2026 · from the abstract

Generalized linear models fit macaque parasol ganglion cells under white noise but fail on naturalistic stimuli, even when fitted on them, and added scalar nonlinearities do not rescue them.

Prevalent encoding models of retinal ganglion cells (RGCs) usually begin by collapsing the visual stimulus through a linear spatiotemporal filter, an assumption validated mainly on stochastic stimuli. Testing that assumption on macaque parasol cells viewing natural images with simulated eye movements finds it does not carry over, pointing instead to spatial nonlinearities, gain control or peripheral effects at the first stage of visual processing.

Key results

  1. SuggestedA generalized linear model (GLM) fitted on white noise reproduced those responses but did not transfer to naturalistic stimuli.

    Reported for ON and OFF parasol RGCs recorded with large-scale multi-electrode arrays; the abstract gives no prediction metric, no cell counts and no quantitative gap between the two stimulus classes. · Abstract

  2. SuggestedThe failure is not merely a mismatch between training and testing stimuli: fitting on naturalistic stimuli directly did not help.

    Models fitted and tested within the naturalistic stimulus set are also reported to miss the recorded responses, again without an accuracy figure. · Abstract

  3. SuggestedScalar nonlinearities placed before or after the linear filter were not enough to repair the model.

    Fitted input and output nonlinearities left the failures in place, which the authors read as evidence for spatial nonlinearities, gain control or peripheral effects in early visual processing. · Abstract

Methods, data and reproducibility

Macaque retinal ganglion cell responses were recorded on large-scale multi-electrode arrays, with ON and OFF parasol cells analysed. Generalized linear models were fitted and tested on white noise and on natural images played with simulated saccadic and fixational eye movements, including fits on naturalistic stimuli alone, and with scalar nonlinearities added around the filter.

  • light responses of ON and OFF parasol retinal ganglion cells from large-scale multi-electrode recordings · macaque
  • visual stimuli: white noise, and natural environment images with simulated saccadic and fixational eye movements
Methods & tools
generalized linear model (GLM), large-scale multi-electrode array recording
Reproducibility gaps
The abstract points to no code, recordings or stimulus set, and does not state how many cells, retinas or animals were used.
Limitations (2)
  • No accuracy numbers are reported: neither the quality of the white-noise fits nor the size of the failure on naturalistic stimuli is quantified in the abstract. · noted in this summary
  • The conclusion rests on two cell types, ON and OFF parasol, in macaque retina; other ganglion cell classes are not examined. · noted in this summary

Who should read:Read this if you fit linear-nonlinear or GLM encoding models to sensory neurons and need to know whether filters validated on white noise hold up under natural stimuli.

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