bioRxivBiochemistryPreprint
A PLP-Dependent Decarboxylative Mannich Reaction Initiates Construction of the Nonpeptidic Scaffold of Kaitocephalin
Tomohiro NoguchiiD, Yukari MaenoiD, Kazuo Shin‐yaiD, Tomohisa KuzuyamaiD
Abstract
Kaitocephalin (KCP) is a fungal neuroactive natural product bearing a peptide-like yet nonpeptidic amino acid-derived scaffold in which amino acid-like units are connected by C-C bonds rather than peptide bonds. The enzymatic construction of this unusual scaffold has remained unresolved. Here, we identify KpbH as a PLP-dependent enzyme that couples pyrroline-5-carboxylate, generated from L-ornithine, with L-aspartate to form (2S,5R)-5-((S)-2-amino-2-carboxyethyl)pyrrolidine-2-carboxylic acid (ACPCA), which corresponds to the nonpeptidic Ala-Pro substructure of KCP. D2O-labeling experiments showed enzyme-controlled, solvent-derived deuterium incorporation at C7 of ACPCA, supporting a decarboxylative Mannich-type mechanism. Feeding of a deuterium-enriched ACPCA-containing reaction mixture to the KCP-producing fungus Eupenicillium shearii resulted in deuterium incorporation into KCP, linking ACPCA to KCP biosynthesis. These results identify KpbH as the first native PLP-dependent enzyme that catalyzes an L-aspartate-dependent decarboxylative Mannich-type C-C bond-forming reaction and reveal a biosynthetic strategy for constructing a noncanonical amino acid-like C-C bond scaffold. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=106 SRC="FIGDIR/small/733665v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@6578eforg.highwire.dtl.DTLVardef@1e6d1b0org.highwire.dtl.DTLVardef@d0881forg.highwire.dtl.DTLVardef@98d3a5_HPS_FORMAT_FIGEXP M_FIG C_FIG
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Biosynthesis of Kaitocephalin: A Neuroprotective Natural Product Featuring a Peptide-Like yet Non-Peptidic Scaffold
Yukari Maeno, Taro Shiraishi, … Tomohisa Kuzuyama·Angewandte Chemie International EditionPeer-reviewed·Feb 10, 2026
- Structure of the ForT/PRPP complex uncovers the mechanism of C-C bond formation in C-nucleotide antibiotic biosynthesis
S. Gao, A. Radadiya, … J. Naismith·bioRxiv·Mar 26, 2020
- Structural Basis for an Unprecedented Enzymatic Alkylation in Cylindrocyclophane Biosynthesis
N. R. Braffman, T. B. Ruskoski, … E. P. Balskus·bioRxiv·Dec 2, 2021
- Biosynthesis of 14-membered cyclopeptide alkaloids via non-heme-iron- and 2-oxoglutarate-dependent oxidative decarboxylation
Jordan A. Hungerford, Lisa S. Mydy, … Roland D. Kersten·Journal of the American Chemical SocietyPeer-reviewed·Feb 16, 2026
- Heterologous Reconstitution of 4-Amidopentadienoate Biosynthesis Identifies the PKS Machinery Responsible for Warhead Formation
Marie Selch Tvilum, Jonas L Veiler, … Thomas Tørring·bioRxiv·Sep 23, 2026
- LanD-like Flavoprotein-Catalyzed Aminovinyl-Cysteine Formation through Oxidative Decarboxylation and Cyclization of a Peptide at the C-Terminus