bioRxivBioinformaticsPreprint
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations
Jie ZhengiD, Elisabetta ManduchiiD, Christian J. StoeckertiD
Abstract
The development process for the beta cell genomics application ontology (BCGO) is described. This process should be generally applicable and consists of integration of a subset of reference ontologies. A key element is use of the Ontology for Biomedical Investigation (OBI) as an ontology framework. Another element is enriching ontologies using existing patterns when needed. The ontology is validated in three aspects based on our needs including data annotation, queries and automated classification. The BCGO is available on: http://purl.obolibrary.org/obo/bcgo.owl.
- Citations
- 13
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- NGBO: Introducing -omics metadata to biobanking ontology.
Dalia A. Alghamdi, Damion Dooley, … William Hsiao·bioRxiv·May 9, 2023
- Use of OWL within the Gene Ontology
Christopher J Mungall, Heiko Dietze, David Osumi-Sutherland·bioRxiv·Oct 7, 2014
- Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining
Jesse C. J. van Dam, Jasper J. Koehorst, … Maria Suarez Diez·bioRxiv·Sep 5, 2017
- MCBO: Mammalian Cell Bioprocessing Ontology, A Hub-and-Spoke, IOF-Anchored Application Ontology
Kimberly Robasky, James Morrissey, … Nathan E. Lewis·bioRxiv·Jan 5, 2026
- OntoContext, a new python package for gene contextualization based on the annotation of biomedical texts
Walid Bedhiafi, Véronique Thomas‐Vaslin, … Adrien Six·bioRxiv·May 27, 2022
- k-BOOM: A Bayesian approach to ontology structure inference, with applications in disease ontology construction
Chris Mungall, Sebastian Koehler, … Melissa Anne Haendel·bioRxiv·Jan 29, 2019