Damion Dooley

VIRUS-MVP: A framework for comprehensive surveillance of viral mutations and their functional impacts

VIRUS-MVP tracks viral mutations and their functional impacts across multiple viruses, providing tools for analysis and visualization.

GAME: Genomic API for Model Evaluation

GAME provides a standardized framework for benchmarking genomics models across tasks, enabling consistent evaluation and community contributions.

NGBO: Introducing -omics metadata to biobanking ontology.

The paper introduces NGBO, an ontology for integrating omics metadata into biobanking, enabling semantic representation and querying of contextual data.

A schema for digitized surface swab site metadata in open-source DNA sequence databases

The paper develops a metadata schema for digitizing swab site locations in DNA sequence databases to improve data interoperability and automation.

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

The paper describes how the OBO Foundry formalized its principles into operational rules and implemented automated checks to evaluate ontology compliance, improving interoperability and quality.

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.

Antibiotic resistance genes in agriculture and urban influenced watersheds in southwestern British Columbia

This study identifies antibiotic resistance genes in agricultural and urban watersheds using metagenomics and qPCR, finding higher ARG abundance in impacted sites.