bioRxivCell Biology
CTRL: a label-free method for dynamic measurement of single-cell volume
Abstract
Measuring the physical size of the cell is valuable in understanding cell growth control. Current single-cell volume measurement methods for mammalian cells are labor-intensive, inflexible, and can cause cell damage. We introduce CTRL: Cell Topography Reconstruction Learner, a label-free technique incorporating Deep Learning and Fluorescence Exclusion for reconstructing cell topography and estimating mammalian cell volume from DIC microscopy images alone. The method achieves quantitative accuracy, requires minimal sample preparation, and applies to extensive biological and experimental conditions. Using this method, we observe a noticeable reduction in cell size fluctuations during cell cycle, which is consistent with the presence of a cell size checkpoint. (https://GitHub.com/sxslabjhu/CTRL)
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Caliban: Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning
Morgan Sarah Schwartz, Erick Moen, … David Van Valen·bioRxiv·Aug 7, 2024
- Label-Free Mammalian Cell Tracking Enhanced by Precomputed Velocity Fields
- Fluorescence exclusion: a rapid, accurate and powerful method for measuring yeast cell volume
D. Garcia-Ruano, A. Jain, … D. Coudreuse·bioRxiv·Oct 7, 2021
- Constitutive expression of a fluorescent protein reports the size of live human cells
D. F. Berenson, E. Zatulovskiy, … J. M. Skotheim·bioRxiv·Mar 23, 2019
- Automated cell tracking using StarDist and TrackMate
E. Fazeli, N. H. Roy, … G. Jacquemet·bioRxiv·Sep 22, 2020
- DeepSea: An efficient deep learning model for single-cell segmentation and tracking of time-lapse microscopy images
Abolfazl Zargari, Gerrald A. Lodewijk, … S. Ali Shariati·Cell Reports MethodsPeer-reviewed·Jun 1, 2023