Tripartite loops reverse antibiotic resistance
Abstract
Antibiotic resistance threatens to undo many of the advancements of modern medicine. A slow antibiotic development pipeline makes it impossible to outpace bacterial evolution, making alternative strategies essential to combat resistance. In this study, we introduce cyclic antibiotic regimens composed of three drugs or "tripartite loops" to contain resistance within a closed drug cycle. We show that as bacteria sequentially evolve resistance to the drugs in a loop, they continually trade their past resistance for fitness gains, reverting back to sensitivity. Through fitness and genomic analyses, we find that tripartite loops guide bacterial strains towards evolutionary paths that mitigate fitness costs and reverse resistance to component drugs in the loops and drive levels of resensitization not achievable through previously suggested pairwise regimens. These findings open the door to sequential antibiotic regimens with high resensitization frequencies which will improve the longevity of existing antibiotics even in the face of antibiotic resistance. TOC O_FIG O_LINKSMALLFIG WIDTH=188 HEIGHT=200 SRC="FIGDIR/small/631305v1_ufig1.gif" ALT="Figure 1"> View larger version (36K): org.highwire.dtl.DTLVardef@1d67a3corg.highwire.dtl.DTLVardef@1f315c7org.highwire.dtl.DTLVardef@1aee0eorg.highwire.dtl.DTLVardef@2e892_HPS_FORMAT_FIGEXP M_FIG C_FIG
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 3
- FWCI
- 1.75
- Field percentile
- top 17%
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Backward collateral sensitivity can restore antibiotic susceptibility
Farhan Rahman Chowdhury, Brandon Findlay·Journal of Antimicrobial ChemotherapyPeer-reviewed·Sep 5, 2025
- PRECISION EVOLUTIONARY MEDICINE: A COMPUTATIONAL GRAPH-THEORETICAL FRAMEWORK FOR PATHOGEN-SPECIFIC ANTIBIOTIC CYCLING IN MULTI-DRUG-RESISTANT GRAM-NEGATIVE INFECTIONS
Ibrahim Shuaibu, Mahrukh Khan, … Mustapha Isa Ahmad·bioRxiv·Jan 18, 2026
- Fitness landscapes reveal simple strategies for steering evolution to minimize antibiotic resistance
Maria Smith, Sarah Cobey·bioRxiv·Dec 11, 2016
- Recurrent Extinction of Resistance Mutations Leads to Convergent Multidrug Resistance in Sequential Antibiotic Treatment
Adam Lyon, Muhammed Sadik Yildiz, … Erdal Toprak·bioRxiv·Apr 8, 2025
- History of Antibiotic Adaptation Influences Microbial Evolutionary Dynamics During Subsequent Treatment
Phillip Yen, Jason A. Papin·PLoS BiologyPeer-reviewed·Aug 8, 2017
- Sequential antibiotic therapy in the lab and in the patient
C. Nyhoegen, H. Uecker·bioRxiv·Jun 17, 2022