henhaobio
Sign in

NMR in BiomedicineNeurosciencePeer-reviewed journal article

Gradient scheme optimization for PRESS-localized edited MRS using weighted pathway suppression

Gizeaddis Lamesgin SimegniD, Zahra ShamsiD, Saipavitra Murali‐ManohariD, Dunja SimičićiD, Abdelrahman Gamil GadiD, Yulu SongiD, Vivek Srikar YedavalliiD, Christopher W. Davies‐JenkinsiD, Aaron T. GudmundsoniD, Helge J. ZöllneriD, Georg OeltzschneriD, Richard A.E. EddeniD

PDFDOIPreprint

Abstract

This study aimed to design and implement an optimized gradient scheme for PRESS-localized edited magnetic resonance spectroscopy (MRS) to enhance suppression of out-of-voxel (OOV) artifacts. These artifacts, which originate from insufficient crushing of unwanted coherence transfer pathways (CTPs), are particularly challenging in editing schemes for metabolites like gamma-aminobutyric acid and glutathione. To address this, a volume-based likelihood model was developed to guide gradient scheme optimization, prioritizing suppression of CTPs based on likelihood. A volume-based likelihood model for CTP weighting was integrated into a Dephasing optimization through coherence order pathway selection (DOTCOPS) gradient optimization. Using a genetic algorithm with a new dual-penalty cost function, gradient schemes were optimized to maximize pathway-specific suppression. Hardware and sequence constraints, maximum gradient amplitudes and delay durations respectively, informed the optimization. Validation of the optimized scheme was performed with simulations by calculating the k-space crushing efficiency analytically with k-space trajectory. and in vivo using an edited MRS sequence in three brain regions (posterior cingulate cortex PCC, thalamus, and medial prefrontal cortex (mPFC)), with particular focus on OOV artifact reduction and spectral quality improvements. A three-way Analysis of Variance was used to assess the significance level of OOV artifact reduction. The optimized gradient scheme demonstrated improved k-space crushing efficiency (by an average of 197%). OOV artifacts were reduced in all brain regions, particularly in highly OOV-susceptible regions (thalamus and mPFC). Improvements were most notable around 4.3 ppm with significant OOV artifact amplitude reductions (p < 0.001). By using a volume-based likelihood model for CTP prioritization, the optimized DOTCOPS scheme ensures robust and region-agnostic performance in reducing OOV artifacts.

Citations
1
FWCI
0.58
Field percentile
top 32%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISSong '22Shams '25Bacon '26Zhou '24Toi '26Huber '26
80% semantic matchBiophysics
y. Song, H. J. Zöllner, S. C. N. Hui+3 more·bioRxiv·Jul 10, 2022