Magnetic Resonance in MedicineNeurosciencePeer-reviewed journal article
Identifying out-of-voxel echoes in edited MRS with phase cycle inversion
Zahra ShamsiD, Abdelrahman GadiD, Aaron T. GudmundsoniD, Saipavitra Murali‐ManohariD, Christopher W. Davies‐JenkinsiD, Gizeaddis Lamesgin SimegniD, Dunja SimičićiD, Yulu SongiD, Vivek Srikar YedavalliiD, Helge J. ZöllneriD, Georg OeltzschneriD, Dillip K. SenapatiiD, Alfons SchnitzleriD, Peter B. BarkeriD, Richard A.E. EddeniD
Abstract
1.PurposeTo identify the origin of out-of-voxel (OOV) signals based on the coherence transfer pathway (CTP) formalism using signal phase conferred by the acquisition phase cycling scheme. Knowing the CTP driving OOV artifacts enables optimization of crusher gradients to improve their suppression without additional data acquisition. Theory and MethodsA phase cycle systematically changes the phase of RF pulses across the transients of an experiment, encoding phase shifts into the data that can be used to suppress unwanted CTPs. We present a new approach, phase cycle inversion (PCI), which removes the receiver phase originally applied to the stored transients, replacing it with new receiver phases, matching the phase evolutions associated with each unwanted CTP, to identify the OOV signals. We demonstrated the efficacy of PCI using the MEGA-edited PRESS sequence in simulations, phantom and in vivo experiments. Based on these findings, the crusher gradient scheme was optimized. ResultsThe simulation results demonstrated that PCI can fully separate signals originating from different CTPs using a complete phase cycling scheme. PCI effectively identified the CTP responsible for OOV signals in phantom experiments and in vivo, though with reduced specificity in vivo due to phase instabilities. Re-optimization of the gradient scheme based on the identified OOV-associated CTP to suppress these signals, resulted in cleaner spectra in six volunteers. ConclusionPCI can be broadly applied across pulse sequences and voxel locations, making it a flexible and generalizable approach for diagnosing the CTP origin of OOV signals.
- Citations
- 2
- FWCI
- 1.15
- Field percentile
- top 21%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Impact of gradient scheme and shimming on out-of-voxel echo artifacts in edited MRS
y. Song, H. J. Zöllner, … R. A. E. Edden·bioRxiv·Jul 10, 2022
- Gradient scheme optimization for PRESS-localized edited MRS using weighted pathway suppression
Gizeaddis Lamesgin Simegn, Zahra Shams, … Richard A.E. Edden·NMR in BiomedicinePeer-reviewed·Nov 19, 2025
- The Proton Resonance Enhancement for CEST imaging and Shift Exchange (PRECISE) family of RF pulse shapes for Chemical Exchange Saturation Transfer MRI
Zinia Mohanta, Julia Stabinska, … Michael T. McMahon·Magnetic Resonance in MedicinePeer-reviewed·Jan 20, 2025
- Real-time AI integration for MR to detect artifacts and guide pulse sequence adaptations
Aaron T. Gudmundson, Zahra Shams, … Richard A.E. Edden·bioRxiv·Sep 28, 2026
- Anatomy-guided Inverse-phase-encoding Registration Method for Correcting Susceptibility Artifacts in Sub-millimeter fMRI
Soan T. M. Duong, Son Lam Phung, … Mark M. Schira·bioRxiv·Sep 23, 2019
- Field-Correcting GRAPPA (FCG): a technique to correctspatiotemporal-varying phase errors in Echo Planar Imaging
Nan Wang, Daniel Abraham, … Kawin Setsompop·bioRxiv·Jul 10, 2026