Frontiers in OncologyCancer BiologyPeer-reviewed journal article
Predicting immune checkpoint therapy response in three independent metastatic melanoma cohorts
Letícia SzadaiiD, Áron BarthaiD, Indira PláiD, Alexandra I.T. Lakatos, D. PaliD, A. S. LengyeliD, Natália Pinto de AlmeidaiD, Ágnes Judit Jánosi, Fábio César Sousa NogueiraiD, Beáta SzeitziD, Viktória Doma, Nicole WoldmariD, Jéssica de Siqueira GuedesiD, Zsuzsanna ÚjfaludiiD, Zoltán Gábor PáhiiD, Tibor PankotaiiD, Yonghyo KimiD, Balázs GyőrffyiD, Bo Baldetorp, Charlotte WelinderiD, Attila Marcell SzásziD, Lazaro Hiram BetancourtiD, Jeovanis GiliD, Roger AppelqvistiD, Ho Jeong KwoniD, , Aniel SáncheziD
Abstract
While Immune checkpoint inhibition (ICI) therapy shows significant efficacy in metastatic melanoma, only about 50% respond, lacking reliable predictive methods. We introduce a panel of six proteins aimed at predicting response to ICI therapy. Evaluating previously reported proteins in two untreated melanoma cohorts, we used a published predictive model (EaSIeR score) to identify potential proteins distinguishing responders and non-responders. Six proteins initially identified in the ICI cohort correlated with predicted response in the untreated cohort. Additionally, three proteins correlated with patient survival, both at the protein, and at the transcript levels, in an independent immunotherapy treated cohort. Our study identifies predictive biomarkers across three melanoma cohorts, suggesting their use in therapeutic decision-making. O_FIG O_LINKSMALLFIG WIDTH=164 HEIGHT=200 SRC="FIGDIR/small/592032v1_ufig1.gif" ALT="Figure 1"> View larger version (63K): org.highwire.dtl.DTLVardef@754668org.highwire.dtl.DTLVardef@1616263org.highwire.dtl.DTLVardef@827009org.highwire.dtl.DTLVardef@1899ba7_HPS_FORMAT_FIGEXP M_FIG C_FIG
- organism: human
- assay: proteomics
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: protein folding & dynamics
- research focus: drug response / drug discovery
- approach: statistical model
- Citations
- 8
- FWCI
- 1.41
- Field percentile
- top 16%
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