Response to comment on 'Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism'
Abstract
Last year we published an article (Witz et al., 2019) in which we used time-lapse microscopy in combination with microfluidics to measure growth, division and replication in single E. coli cells on the one hand, and developed a new statistical analysis method to calculate the ability of different cell cycle models to capture the correlation structure observed in the data on the other hand. This led us to propose a new model of cell cycle control in E. coli which we called the double-adder model. Recently Le Treut et al. published a comment (Le Treut et al., 2020) on our article which made a number of highly critical claims, including allegations that our own data support a different model than the one we proposed, and that our model cannot reproduce the adder phenotype observed in the data. We here show that all these allegations are false and based on basic analysis errors. Although our focus is on explaining the errors in the analysis of Le Treut et al, we have attempted to make the presentation of interest to a broader scientific audience by discussing the issues in the context of what our current understanding is of the bacterial cell cycle, and to what extent recent data either support or reject various proposed models.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 6
- Organism
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Guillaume Witz, Erik van Nimwegen, Thomas Julou·eLifePeer-reviewed·Nov 11, 2019
- Comment on 'Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism'
Guillaume Le Treut, Fangwei Si, … Suckjoon Jun·bioRxiv·May 8, 2020
- Quantitative examination of five stochastic cell-cycle and cell-size control models for Escherichia coli and Bacillus subtilis
Guillaume Le Treut, Fangwei Si, … Suckjoon Jun·Frontiers in MicrobiologyPeer-reviewed·Oct 26, 2021
- Single-cell data and correlation analysis support the independent double adder model in both Escherichia coli and Bacillus subtilis
Guillaume Le Treut, Fangwei Si, … Suckjoon Jun·bioRxiv·Oct 6, 2020
- Dissecting the control mechanisms for DNA replication and cell division in E. coli
G. Micali, J. Grilli, … M. Cosentino Lagomarsino·bioRxiv·Apr 25, 2018
- Deciphering the Replication-Division Coordination in E. coli: A Unified Mathematical framework for Systematic Model Comparison
Alexandre Perrin, Marie Doumic, … Sylvie Méléard·bioRxiv·Jul 25, 2025