Viral Landscape of Gastric Adenocarcinoma Reveals Clinically Relevant Viruses
Diego PereiraiD, Fabiano Cordeiro MoreiraiD, Daniel de Souza AvelariD, Sérgio Augusto Antunes RamosiD, Valéria Cristiane Santos da SilvaiD, Jéssica Manoelli Costa da SilvaiD, Ronald Matheus da Silva MourãoiD, Rubem Ferreira da SilvaiD, Kaue Sant Ana Pereira GuimaraesiD, Juliana Barreto Albuquerque PintoiD, Marcos da ConceiçãoiD, Williams Fernandes BarraiD, Sâmia DemachkiiD, Samir Mansour Moraes CassebiD, Rommel Mário Rodríguez BurbanoiD, Paulo Pimentel de AssumpçãoiD
Abstract
BackgroundGastric cancer (GC) ranks among the most common and lethal cancers worldwide, with poor prognosis mainly due to late diagnosis. Accumulating evidence highlights the role of the gastric microbiome in carcinogenesis through inflammation, genomic instability, and immune modulation. Unlike the bacterial component, the gastric virome remains largely unexplored despite its potential contribution to tumor development. The present study aimed to characterize the virome present in tumor and peritumoral tissues from patients with GC. Materials and Methods105 tumor and 85 peritumoral gastric tissues were analyzed. RNA was extracted, libraries were prepared, and sequencing was performed on the Illumina NextSeq 500. Viral reads were classified with Kraken2. Taxonomic profiles, viral abundance and diversity metrics were computed in R, with group differences assessed by Wilcoxon tests and PERMANOVA (p < 0.05). ResultsIn this study, 38 viral orders and 329 viral genera were identified in gastric tumor and peritumoral tissues. Tumor tissues harbored 210 viral genera, including 109 exclusive to this microenvironment, with bacteriophages comprising the majority, alongside human-infecting and other eukaryotic viruses. Lymphocryptovirus, Cytomegalovirus, and Alphapapillomavirus were enriched in tumors. Alpha and beta diversity analyses revealed no significant differences between tumor and peritumoral tissues, indicating comparable viral richness and composition. ConclusionThese findings underscore the complexity of the gastric virome and provide a foundation for future investigations into the interactions and mechanisms through which the viral community could influence the development of gastric cancer, highlighting its potential role in gastric health and disease.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Immune Remodeling and Dysbiosis May Distinguish the Microenvironments of Gastric Adenocarcinoma and Peritumoral Tissue
Ronald Matheus da Silva Mourão, Juliana Barreto Albuquerque Pinto, … Paulo Pimentel de Assumpção·Lecture notes in computer sciencePeer-reviewed·Nov 16, 2025
- The presence of periodontal pathogens in gastric cancer
M. A. de Leeuw, M. X. Duval·bioRxiv·Mar 23, 2020
- The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome
G. D. Hannigan, M. B. Duhaime, … P. D. Schloss·bioRxiv·Oct 11, 2018
- Unmasking Epstein-Barr Role in Gastric Carcinogenesis: A Gene Expression Approach to Virus-Positive Tumors
Valéria Cristiane Santos da Silva, Diego Pereira, … Rommel Mário Rodríguez Burbano·bioRxiv·Jan 23, 2025
- Characterization of Human Endogenous Retroviruses in Gastric Cancer with Helicobacter pylori: A Study from Northern Brazil
Marcos da Conceição, Juliana Barreto Albuquerque Pinto, … Fabiano Cordeiro Moreira·bioRxiv·Sep 6, 2025
- Meta-analysis of fecal metagenomes reveals global viral signatures and its diagnostic potential for colorectal cancer and adenoma