bioRxivDevelopmental BiologyPreprint
Regenerative epithelial spike cells instruct immune niche homeostasis in zebrafish fin epidermis
Siyang CaoiD, Margaret K. KeatingiD, Julia O'Hagan, Anjelica Rodriguez-ParksiD, Yiran HouiD, Tanner F RobertsoniD, Anna HuttenlocheriD, Junsu KangiD
Abstract
Epithelia comprise diverse specialized epithelial cells that interact with immune cells, yet how these interactions sustain immune cell pools remain poorly understood. Here, we integrated single-cell RNA sequencing (scRNA-seq) analysis with transgenic assays in zebrafish and discovered a previously unrecognized epithelial population marked by advillin (avil). We identified epithelial cells exhibiting unique morphology and localization, characterized by an apical spike projecting outward from the body - which we term spike cells. These cells exhibit features reminiscent of mammalian tuft cells. Notably, avil+ spike cells exhibit close spatial association with a subset of mpeg1+ immune cells. Following fin amputation, spike cells are replenished de novo from precursors and undergo dynamic changes in density, morphology, and orientation, and their regeneration depends on Alk signaling. Moreover, spike cells dynamically interact with mpeg1+ immune cells to maintain the immune cell population. Together, our findings identify a unique epithelial population in zebrafish fins and define their roles in maintaining immune cell niche dynamics.
- organism: zebrafish
- assay: scRNA-seq
- research focus: cell type annotation
- research focus: cell-cell communication
- research focus: development & morphogenesis
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Single-cell RNA-seq reveals endoimmune cells in zebrafish
- Single-cell resolution of MET and EMT programs during zebrafish fin regeneration
Weiliang Tang, Claire J. Watson, … Ronald Young Kwon·iSciencePeer-reviewed·Jan 19, 2022
- Distinct progenitor populations mediate regeneration in the zebrafish lateral line.
Eric D. Thomas, David W. Raible·eLifePeer-reviewed·Mar 5, 2019
- Dendritic atoh1a+ cells serve as transient intermediates during zebrafish Merkel cell development and regeneration
Evan W Craig, Erik C. Black, … Jeffrey P. Rasmussen·DevelopmentPeer-reviewed·May 30, 2025
- Single-cell RNA sequencing unveils the hidden powers of zebrafish kidney for generating both hematopoiesis and adaptive antiviral immunity
C. Hu, N. Zhang, … J.-z. Shao·bioRxiv·Oct 6, 2023
- Mucus cell and ionocyte precursors migrate between epithelial cells to disperse through the zebrafish epidermis
Khaled Y. Nassman, Olivia Justynski, … Alvaro Sagasti·bioRxiv·Jul 28, 2026