Exploiting the sequence diversity of TALE-like repeats to vary the strength of dTALE-promoter interactions
O. de Lange, N. Schandry, M. Wunderlich, K. W. Berendzen, T. Lahaye
Abstract
Introduction Introduction Methods Results Discussion SI References TALE (Transcriptional activator like effector) repeat arrays are a popular form of programmable DNA binding domain. Reprogrammed TALE transcription factors are referred to as dTALEs (designer-TALEs), and are used within the field of synthetic biology1 as well as fundamental research2.\n\nNaturally TALEs are pathogenicity factors secreted by Xanthomonas spp. into host plant cells to bind specific promoters and manipulate host transcription3. Sequence specific DNA binding is conferred by the TALE repeat array. Natural TALE repeat arrays are formed of 10-30 repeats4, each of which pairs with one DNA base. Collectively the repeats ...
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Functional instability allows access to DNA in longer Transcription Activator-Like Effector (TALE) arrays.
K. Geiger-Schuller, J. Mitra, … D. Barrick·bioRxiv·Jul 5, 2018
- Characterization of gene repression by designed transcription activator-like effector dimer proteins
N. Becker, J. Peters, … L. J. Maher·Biophysical JournalPeer-reviewed·Nov 1, 2020
- In vitro evolution of DNA operators enables multivalency protein-DNA interactions: towards programmable transcription factor regulation
Natalia A Adler, Giuliano T. Antelo, … Daiana A. Capdevila·bioRxiv·May 4, 2026
- Generative AI-based design of hybrid transcriptional activator proteins with new DNA-binding specificity
Sota L Okuda, Atsushi Minami, … Daisuke Kiga·bioRxiv·Mar 13, 2026
- Tuning plant promoters using a simple split luciferase method to assess transcription factor-DNA interactions
Yaomin Cai, S Witham, Nicola J. Patron·bioRxiv·Feb 13, 2023
- SiteOut: an online tool to design binding site-free DNA sequences
Javier Estrada, Teresa Ruiz-Herrero, … Angela DePace·PLOS ONEPeer-reviewed·Mar 17, 2016